You have not stated the specific dimensioning and tolerancing standard therefore I'm going to give you a general ~ specific answer.
For any ASME or ANSI standards position tolerance is used to locate a feature of size and profile of a surface and line defines tolerance boundaries within which a surface profile feature as-built must lie within.
For ISO or any of the derivative dimensioning and tolerancing standards, position tolerance may be used to locate an individual planar surface as well as a feature of size and profile any line or surface defines tolerance boundaries within which a surface profile feature as-built must lie within.
Based on your description your organization needs training to whatever standard being used in order to get everybody on the same page in regards to interpreting dimensioning and tolerancing..